Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_02003Hypothetical protein. (88 aa)    
Predicted Functional Partners:
C820_00934
Hypothetical protein.
  
  
 0.712
C820_00932
Hypothetical protein.
  
  
 0.667
C820_00598
Hypothetical protein.
  
  
 0.579
C820_00750
Hypothetical protein.
  
  
 0.579
C820_00929
Phage tail protein domain protein.
  
  
 0.579
C820_00232
Hypothetical protein.
  
  
 0.559
C820_00609
Hypothetical protein.
  
  
 0.559
C820_00940
Hypothetical protein.
  
  
 0.559
C820_00997
Hypothetical protein.
  
  
 0.559
C820_01985
Hypothetical protein.
  
  
 0.559
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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