STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C820_02010Phage phi LC3 family holin. (87 aa)    
Predicted Functional Partners:
C820_02009
Hypothetical protein.
       0.773
C820_02012
Hypothetical protein.
       0.605
C820_02011
DNA (cytosine-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
    0.604
C820_01130
Hypothetical protein; Belongs to the glycosyl hydrolase 26 family.
  
     0.531
C820_02382
Hypothetical protein.
  
     0.530
C820_00830
Hypothetical protein; Belongs to the UPF0342 family.
  
     0.529
C820_02006
Hypothetical protein.
       0.524
C820_02007
Hypothetical protein.
       0.524
C820_02008
Hypothetical protein.
       0.524
C820_00639
Hypothetical protein.
  
     0.508
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.