Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
C820_02142DNA-3-methyladenine glycosylase; Belongs to the DNA glycosylase MPG family. (188 aa)    
Predicted Functional Partners:
C820_02143
Hypothetical protein.
       0.642
C820_02141
Hypothetical protein.
       0.610
C820_01514
Exodeoxyribonuclease III (xth).
    
 0.534
pheT
phenylalanine-tRNA ligase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
    0.456
C820_02140
Hypothetical protein.
       0.434
C820_02138
Hypothetical protein.
       0.433
C820_02139
Hypothetical protein.
       0.433
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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