Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C820_02151ATP-dependent protease LonB. (563 aa)    
Predicted Functional Partners:
C820_00258
Stage III sporulation protein AB.
  
    0.672
C820_00261
Stage III sporulation protein AE.
  
    0.604
C820_00260
Stage III sporulation protein AD.
  
    0.579
C820_02152
Hypothetical protein.
       0.484
C820_02153
Hypothetical protein.
       0.484
C820_02154
Hypothetical protein.
       0.484
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
  
 0.483
C820_01091
Hypothetical protein.
  
     0.466
C820_02289
Stage V sporulation protein T.
  
     0.460
C820_01355
Hypothetical protein.
 
     0.459
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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