Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_02248Diguanylate cyclase (GGDEF) domain-containing protein. (772 aa)    
Predicted Functional Partners:
C820_02250
Hypothetical protein.
 
 
 0.969
C820_02527
Hypothetical protein.
 
 
 0.961
C820_00362
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.959
C820_01802
Hypothetical protein.
 
 
 0.955
C820_02667
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.947
C820_00226
Hypothetical protein.
  
 
 0.937
C820_01225
Two-component system, chemotaxis family, response regulator CheV.
  
 
 0.935
C820_02330
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.914
C820_01801
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.884
C820_02526
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.882
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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