Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_02401Hypothetical protein. (129 aa)    
Predicted Functional Partners:
C820_00882
Hypothetical protein.
    
  0.638
C820_01091
Hypothetical protein.
    
  0.638
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
  0.638
C820_02073
Hypothetical protein.
  
     0.525
gpsA
Hypothetical protein; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
   0.514
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.503
C820_02399
Hypothetical protein.
       0.479
C820_02818
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
   0.443
C820_02849
Sortase.
  
     0.407
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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