Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_02434Hypothetical protein. (231 aa)    
Predicted Functional Partners:
C820_02433
Hypothetical protein.
 0.994
C820_02729
Hypothetical protein.
 
 0.935
C820_00495
Hypothetical protein.
 
 0.915
C820_00499
Hypothetical protein.
 
 0.901
C820_02250
Hypothetical protein.
 
 
 0.855
C820_02840
Hypothetical protein.
 
 
 0.828
C820_02690
Heavy metal sensor kinase.
 
 
 0.820
C820_02527
Hypothetical protein.
  
 
 0.798
C820_00025
Hypothetical protein.
 
   0.781
C820_00131
Hypothetical protein.
 
  
 0.758
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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