Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_02438Hypothetical protein. (258 aa)    
Predicted Functional Partners:
C820_01538
N-acetylmuramoyl-L-alanine amidase CwlD.
  
  
 
0.925
C820_02335
Hypothetical protein.
  
  
  0.919
C820_00503
Hypothetical protein.
     
  0.900
C820_02772
Hypothetical protein.
  
     0.765
C820_02771
Hypothetical protein.
  
     0.751
C820_02495
Hypothetical protein.
   
   0.730
C820_02439
Hypothetical protein.
       0.518
C820_02761
Hypothetical protein.
    
   0.456
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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