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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C820_02485Hypothetical protein. (266 aa)    
Predicted Functional Partners:
C820_02658
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
 0.910
C820_00473
Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.905
C820_00475
Malonyl CoA-acyl carrier protein transacylase.
 0.879
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
 
 0.860
C820_00354
Hypothetical protein.
  
 
 0.846
C820_00111
PTS system, glucose subfamily, IIA component.
     
 0.829
C820_00384
PTS system, maltose and glucose-specific subfamily, IIC component.
     
 0.829
C820_00728
PTS system, beta-glucoside-specific IIABC component.
     
 0.829
C820_01840
PTS system, beta-glucoside-specific IIABC component.
     
 0.829
C820_01934
PTS system, beta-glucoside-specific IIABC component.
     
 0.829
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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