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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C820_02496uracil-DNA glycosylase, family 4. (199 aa)    
Predicted Functional Partners:
C820_02366
uracil-DNA glycosylase, family 4.
 
  
 
0.931
C820_02495
Hypothetical protein.
       0.580
C820_01196
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.518
C820_01732
Hypothetical protein.
  
    0.498
C820_02477
Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
    0.486
C820_02775
Universal bacterial protein YeaZ.
  
    0.480
C820_00776
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
   0.441
C820_01677
Hypothetical protein.
    
   0.441
C820_02339
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
   0.441
C820_00414
Phosphoribosylformylglycinamidine synthase.
       0.428
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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