Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_02533Hypothetical protein. (623 aa)    
Predicted Functional Partners:
C820_00414
Phosphoribosylformylglycinamidine synthase.
  
  
 0.746
C820_02658
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
     
 0.587
C820_00421
Glyceraldehyde-3-phosphate dehydrogenase 2; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.576
C820_02818
Pyruvate kinase; Belongs to the pyruvate kinase family.
      
 0.481
C820_00532
Hypothetical protein.
  
  
 0.473
C820_01762
Hypothetical protein.
  
  
 0.443
C820_00111
PTS system, glucose subfamily, IIA component.
     
 0.440
C820_00384
PTS system, maltose and glucose-specific subfamily, IIC component.
     
 0.440
C820_00728
PTS system, beta-glucoside-specific IIABC component.
     
 0.440
C820_01840
PTS system, beta-glucoside-specific IIABC component.
     
 0.440
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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