DFL_008509 protein (Arthrobotrys flagrans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DFL_008509

HABP4_PAI-RBP1 domain-containing protein. (320 aa)

Predicted Functional Partners:

DFL_000157

0.956

DFL_006617

0.937

DFL_009233

0.931

DFL_000906

0.921

DFL_005308

0.918

DFL_009586

0.905

DFL_001595

0.886

DFL_005363

0.878

DFL_001810

0.877

DFL_001560

0.874

Your Current Organism:

Arthrobotrys flagrans

NCBI taxonomy Id: 97331
Other names: A. flagrans, Duddingtonia flagrans, Trichothecium flagrans

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFL_000157	DFL_000906	A0A437AE93	A0A437AF04	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein.	0.999
DFL_000157	DFL_001560	A0A437AE93	A0A437A851	Uncharacterized protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.997
DFL_000157	DFL_001595	A0A437AE93	A0A437A8C2	Uncharacterized protein.	Ribosomal protein L22/L17 superfamily; Belongs to the universal ribosomal protein uL22 family.	0.999
DFL_000157	DFL_001810	A0A437AE93	A0A437A8N2	Uncharacterized protein.	Uncharacterized protein.	0.999
DFL_000157	DFL_005308	A0A437AE93	A0A437A818	Uncharacterized protein.	Uncharacterized protein.	0.998
DFL_000157	DFL_005363	A0A437AE93	A0A437A876	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.998
DFL_000157	DFL_006617	A0A437AE93	A0A436ZTA4	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.998
DFL_000157	DFL_008509	A0A437AE93	A0A436ZP02	Uncharacterized protein.	HABP4_PAI-RBP1 domain-containing protein.	0.956
DFL_000157	DFL_009233	A0A437AE93	A0A436ZR22	Uncharacterized protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.998
DFL_000157	DFL_009586	A0A437AE93	A0A436ZS34	Uncharacterized protein.	Ribosomal_L18_c domain-containing protein.	0.999
DFL_000906	DFL_000157	A0A437AF04	A0A437AE93	Ribosomal_L23eN domain-containing protein.	Uncharacterized protein.	0.999
DFL_000906	DFL_001560	A0A437AF04	A0A437A851	Ribosomal_L23eN domain-containing protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.997
DFL_000906	DFL_001595	A0A437AF04	A0A437A8C2	Ribosomal_L23eN domain-containing protein.	Ribosomal protein L22/L17 superfamily; Belongs to the universal ribosomal protein uL22 family.	0.999
DFL_000906	DFL_001810	A0A437AF04	A0A437A8N2	Ribosomal_L23eN domain-containing protein.	Uncharacterized protein.	0.999
DFL_000906	DFL_005308	A0A437AF04	A0A437A818	Ribosomal_L23eN domain-containing protein.	Uncharacterized protein.	0.999
DFL_000906	DFL_005363	A0A437AF04	A0A437A876	Ribosomal_L23eN domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999
DFL_000906	DFL_006617	A0A437AF04	A0A436ZTA4	Ribosomal_L23eN domain-containing protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.998
DFL_000906	DFL_008509	A0A437AF04	A0A436ZP02	Ribosomal_L23eN domain-containing protein.	HABP4_PAI-RBP1 domain-containing protein.	0.921
DFL_000906	DFL_009233	A0A437AF04	A0A436ZR22	Ribosomal_L23eN domain-containing protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
DFL_000906	DFL_009586	A0A437AF04	A0A436ZS34	Ribosomal_L23eN domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.999