Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DFL_009470HTH cro/C1-type domain-containing protein. (158 aa)    
Predicted Functional Partners:
DFL_002498
Uncharacterized protein.
    
 
 0.969
DFL_005562
WD_REPEATS_REGION domain-containing protein.
   
 
 0.954
DFL_006033
Uncharacterized protein.
   
 
 0.931
DFL_001999
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 
 0.930
DFL_005983
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.929
DFL_004169
Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.
   
   0.916
DFL_000945
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
   
   0.915
DFL_001091
S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.
   
   0.911
DFL_007136
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
   0.910
DFL_005251
40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability.
   
 
 0.910
Your Current Organism:
Arthrobotrys flagrans
NCBI taxonomy Id: 97331
Other names: A. flagrans, Duddingtonia flagrans, Trichothecium flagrans
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