DFL_009633 protein (Arthrobotrys flagrans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DFL_009633

RRM domain-containing protein. (1418 aa)

Predicted Functional Partners:

DFL_008228

0.543

DFL_002202

0.542

DFL_009200

0.540

DFL_004091

0.540

DFL_007715

0.539

DFL_004973

0.532

DFL_007298

0.525

DFL_005519

0.525

DFL_005889

0.522

DFL_001576

0.520

Your Current Organism:

Arthrobotrys flagrans

NCBI taxonomy Id: 97331
Other names: A. flagrans, Duddingtonia flagrans, Trichothecium flagrans

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFL_001576	DFL_002202	A0A437A7Z7	A0A437AA61	N-acetyltransferase domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.405
DFL_001576	DFL_004091	A0A437A7Z7	A0A437A3U0	N-acetyltransferase domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.480
DFL_001576	DFL_004973	A0A437A7Z7	A0A437A6D2	N-acetyltransferase domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.499
DFL_001576	DFL_005519	A0A437A7Z7	A0A436ZXN6	N-acetyltransferase domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.485
DFL_001576	DFL_005889	A0A437A7Z7	A0A436ZZH2	N-acetyltransferase domain-containing protein.	RNA helicase.	0.802
DFL_001576	DFL_007298	A0A437A7Z7	A0A436ZVA4	N-acetyltransferase domain-containing protein.	Small nuclear ribonucleoprotein G.	0.530
DFL_001576	DFL_007715	A0A437A7Z7	A0A436ZXA3	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.508
DFL_001576	DFL_008228	A0A437A7Z7	A0A436ZN58	N-acetyltransferase domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.475
DFL_001576	DFL_009633	A0A437A7Z7	A0A436ZSC2	N-acetyltransferase domain-containing protein.	RRM domain-containing protein.	0.520
DFL_002202	DFL_001576	A0A437AA61	A0A437A7Z7	Uncharacterized protein; Belongs to the DEAD box helicase family.	N-acetyltransferase domain-containing protein.	0.405
DFL_002202	DFL_004091	A0A437AA61	A0A437A3U0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Nuclear cap-binding protein subunit 2.	0.975
DFL_002202	DFL_004973	A0A437AA61	A0A437A6D2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.928
DFL_002202	DFL_005519	A0A437AA61	A0A436ZXN6	Uncharacterized protein; Belongs to the DEAD box helicase family.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.545
DFL_002202	DFL_005889	A0A437AA61	A0A436ZZH2	Uncharacterized protein; Belongs to the DEAD box helicase family.	RNA helicase.	0.644
DFL_002202	DFL_007298	A0A437AA61	A0A436ZVA4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein G.	0.541
DFL_002202	DFL_007715	A0A437AA61	A0A436ZXA3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.952
DFL_002202	DFL_008228	A0A437AA61	A0A436ZN58	Uncharacterized protein; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.752
DFL_002202	DFL_009200	A0A437AA61	A0A436ZR11	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.977
DFL_002202	DFL_009633	A0A437AA61	A0A436ZSC2	Uncharacterized protein; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.542
DFL_004091	DFL_001576	A0A437A3U0	A0A437A7Z7	Nuclear cap-binding protein subunit 2.	N-acetyltransferase domain-containing protein.	0.480