DFL_009625 protein (Arthrobotrys flagrans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DFL_009625

TAFII28 domain-containing protein. (287 aa)

Predicted Functional Partners:

DFL_007408

0.999

DFL_008171

0.998

DFL_008327

0.998

DFL_009579

0.998

DFL_009754

0.998

DFL_007293

0.998

DFL_004202

0.998

DFL_005140

0.998

DFL_001922

0.998

DFL_002498

0.998

Your Current Organism:

Arthrobotrys flagrans

NCBI taxonomy Id: 97331
Other names: A. flagrans, Duddingtonia flagrans, Trichothecium flagrans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFL_001922	DFL_002498	A0A437A9C5	A0A437AAM4	Uncharacterized protein.	Uncharacterized protein.	0.998
DFL_001922	DFL_004202	A0A437A9C5	A0A437A479	Uncharacterized protein.	Uncharacterized protein.	0.998
DFL_001922	DFL_005140	A0A437A9C5	A0A437A785	Uncharacterized protein.	Uncharacterized protein.	0.998
DFL_001922	DFL_007293	A0A437A9C5	A0A436ZVY2	Uncharacterized protein.	Peptidase_M1 domain-containing protein.	0.998
DFL_001922	DFL_007408	A0A437A9C5	A0A436ZVL0	Uncharacterized protein.	PHD domain-containing protein.	0.997
DFL_001922	DFL_008171	A0A437A9C5	A0A436ZN18	Uncharacterized protein.	Uncharacterized protein.	0.998
DFL_001922	DFL_008327	A0A437A9C5	A0A436ZNH0	Uncharacterized protein.	TAF domain-containing protein.	0.998
DFL_001922	DFL_009579	A0A437A9C5	A0A436ZS19	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.998
DFL_001922	DFL_009625	A0A437A9C5	A0A436ZSP7	Uncharacterized protein.	TAFII28 domain-containing protein.	0.998
DFL_001922	DFL_009754	A0A437A9C5	A0A436ZSJ8	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.998
DFL_002498	DFL_001922	A0A437AAM4	A0A437A9C5	Uncharacterized protein.	Uncharacterized protein.	0.998
DFL_002498	DFL_004202	A0A437AAM4	A0A437A479	Uncharacterized protein.	Uncharacterized protein.	0.995
DFL_002498	DFL_005140	A0A437AAM4	A0A437A785	Uncharacterized protein.	Uncharacterized protein.	0.998
DFL_002498	DFL_007293	A0A437AAM4	A0A436ZVY2	Uncharacterized protein.	Peptidase_M1 domain-containing protein.	0.998
DFL_002498	DFL_007408	A0A437AAM4	A0A436ZVL0	Uncharacterized protein.	PHD domain-containing protein.	0.995
DFL_002498	DFL_008171	A0A437AAM4	A0A436ZN18	Uncharacterized protein.	Uncharacterized protein.	0.998
DFL_002498	DFL_008327	A0A437AAM4	A0A436ZNH0	Uncharacterized protein.	TAF domain-containing protein.	0.998
DFL_002498	DFL_009579	A0A437AAM4	A0A436ZS19	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.998
DFL_002498	DFL_009625	A0A437AAM4	A0A436ZSP7	Uncharacterized protein.	TAFII28 domain-containing protein.	0.998
DFL_002498	DFL_009754	A0A437AAM4	A0A436ZSJ8	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.998