Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DFL_007855Proteasome subunit beta. (205 aa)    
Predicted Functional Partners:
DFL_008133
Proteasome subunit alpha type.
   
 0.999
DFL_008933
Proteasome subunit beta.
   
 0.999
DFL_008960
Proteasome subunit beta.
   
 0.999
DFL_009422
Proteasome endopeptidase complex; Belongs to the peptidase T1A family.
   
 0.999
DFL_009655
Proteasome subunit alpha type.
   
 0.999
DFL_006831
Proteasome subunit alpha type.
   
 0.999
DFL_007677
Proteasome subunit alpha type.
   
 0.999
DFL_006224
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
 0.999
DFL_002418
Proteasome subunit beta; Belongs to the peptidase T1B family.
   
 0.999
DFL_002742
Proteasome subunit alpha type.
   
 0.999
Your Current Organism:
Arthrobotrys flagrans
NCBI taxonomy Id: 97331
Other names: A. flagrans, Duddingtonia flagrans, Trichothecium flagrans
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