Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DFL_007876RING-type domain-containing protein. (544 aa)    
Predicted Functional Partners:
DFL_007175
PRKCSH domain-containing protein.
    
 0.954
DFL_008410
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.897
DFL_005252
3-hydroxy-3-methylglutaryl coenzyme A reductase.
    
 
 0.889
DFL_001653
UBX domain-containing protein.
    
 
 0.860
DFL_007698
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
 0.846
DFL_002303
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
 0.846
DFL_008919
Uncharacterized protein.
    
 
 0.834
DFL_009225
MPN domain-containing protein.
    
 
 0.817
DFL_007347
Uncharacterized protein.
    
  0.807
DFL_002592
Ubiquitin-like domain-containing protein.
    
  0.807
Your Current Organism:
Arthrobotrys flagrans
NCBI taxonomy Id: 97331
Other names: A. flagrans, Duddingtonia flagrans, Trichothecium flagrans
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