DFL_006079 protein (Arthrobotrys flagrans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DFL_006079

Uncharacterized protein. (674 aa)

Predicted Functional Partners:

DFL_008424

0.722

DFL_009794

0.722

DFL_003396

0.722

DFL_003698

0.722

DFL_002489

0.722

DFL_004700

0.699

DFL_002648

0.671

DFL_005875

0.669

DFL_006407

0.669

DFL_003430

0.669

Your Current Organism:

Arthrobotrys flagrans

NCBI taxonomy Id: 97331
Other names: A. flagrans, Duddingtonia flagrans, Trichothecium flagrans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFL_002489	DFL_002648	A0A437ABX0	A0A437AB23	Uncharacterized protein.	Uncharacterized protein.	0.750
DFL_002489	DFL_003430	A0A437ABX0	A0A437A1T2	Uncharacterized protein.	Uncharacterized protein.	0.569
DFL_002489	DFL_004700	A0A437ABX0	A0A437A5E9	Uncharacterized protein.	Glycosidase; Belongs to the glycosyl hydrolase 16 family.	0.589
DFL_002489	DFL_005875	A0A437ABX0	A0A436ZYK8	Uncharacterized protein.	Uncharacterized protein.	0.569
DFL_002489	DFL_006079	A0A437ABX0	A0A436ZZ84	Uncharacterized protein.	Uncharacterized protein.	0.722
DFL_002489	DFL_006407	A0A437ABX0	A0A437A0A9	Uncharacterized protein.	Uncharacterized protein.	0.569
DFL_002648	DFL_002489	A0A437AB23	A0A437ABX0	Uncharacterized protein.	Uncharacterized protein.	0.750
DFL_002648	DFL_003396	A0A437AB23	A0A437A1P9	Uncharacterized protein.	Uncharacterized protein.	0.750
DFL_002648	DFL_003698	A0A437AB23	A0A437A2L6	Uncharacterized protein.	Uncharacterized protein.	0.750
DFL_002648	DFL_006079	A0A437AB23	A0A436ZZ84	Uncharacterized protein.	Uncharacterized protein.	0.671
DFL_002648	DFL_008424	A0A437AB23	A0A436ZNQ0	Uncharacterized protein.	tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]	0.750
DFL_002648	DFL_009794	A0A437AB23	A0A436ZSU8	Uncharacterized protein.	TRF domain-containing protein.	0.750
DFL_003396	DFL_002648	A0A437A1P9	A0A437AB23	Uncharacterized protein.	Uncharacterized protein.	0.750
DFL_003396	DFL_003430	A0A437A1P9	A0A437A1T2	Uncharacterized protein.	Uncharacterized protein.	0.569
DFL_003396	DFL_004700	A0A437A1P9	A0A437A5E9	Uncharacterized protein.	Glycosidase; Belongs to the glycosyl hydrolase 16 family.	0.589
DFL_003396	DFL_005875	A0A437A1P9	A0A436ZYK8	Uncharacterized protein.	Uncharacterized protein.	0.569
DFL_003396	DFL_006079	A0A437A1P9	A0A436ZZ84	Uncharacterized protein.	Uncharacterized protein.	0.722
DFL_003396	DFL_006407	A0A437A1P9	A0A437A0A9	Uncharacterized protein.	Uncharacterized protein.	0.569
DFL_003430	DFL_002489	A0A437A1T2	A0A437ABX0	Uncharacterized protein.	Uncharacterized protein.	0.569
DFL_003430	DFL_003396	A0A437A1T2	A0A437A1P9	Uncharacterized protein.	Uncharacterized protein.	0.569