DFL_002740 protein (Arthrobotrys flagrans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DFL_002740

Uncharacterized protein. (329 aa)

Predicted Functional Partners:

DFL_003261

0.920

DFL_009065

0.856

DFL_002285

0.854

DFL_007703

0.843

DFL_001108

0.645

DFL_004189

0.624

DFL_009508

0.585

DFL_007457

0.575

NOP7

0.564

DFL_004775

0.528

Your Current Organism:

Arthrobotrys flagrans

NCBI taxonomy Id: 97331
Other names: A. flagrans, Duddingtonia flagrans, Trichothecium flagrans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFL_001108	DFL_002740	A0A437AG75	A0A437ABB2	Uncharacterized protein.	Uncharacterized protein.	0.645
DFL_001108	DFL_004189	A0A437AG75	A0A437A436	Uncharacterized protein.	Ipi1_N domain-containing protein.	0.998
DFL_001108	DFL_004775	A0A437AG75	A0A437A5X9	Uncharacterized protein.	Uncharacterized protein.	0.950
DFL_001108	DFL_007457	A0A437AG75	A0A436ZWB0	Uncharacterized protein.	CP-type G domain-containing protein.	0.976
DFL_001108	NOP7	A0A437AG75	A0A437A5D1	Uncharacterized protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.968
DFL_002285	DFL_002740	A0A437AB28	A0A437ABB2	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.854
DFL_002285	DFL_003261	A0A437AB28	A0A437A1B5	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.985
DFL_002285	DFL_007457	A0A437AB28	A0A436ZWB0	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	CP-type G domain-containing protein.	0.476
DFL_002285	DFL_007703	A0A437AB28	A0A436ZWN8	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.978
DFL_002285	DFL_009065	A0A437AB28	A0A436ZQL1	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.995
DFL_002285	DFL_009508	A0A437AB28	A0A436ZS00	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.903
DFL_002740	DFL_001108	A0A437ABB2	A0A437AG75	Uncharacterized protein.	Uncharacterized protein.	0.645
DFL_002740	DFL_002285	A0A437ABB2	A0A437AB28	Uncharacterized protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.854
DFL_002740	DFL_003261	A0A437ABB2	A0A437A1B5	Uncharacterized protein.	Uncharacterized protein.	0.920
DFL_002740	DFL_004189	A0A437ABB2	A0A437A436	Uncharacterized protein.	Ipi1_N domain-containing protein.	0.624
DFL_002740	DFL_004775	A0A437ABB2	A0A437A5X9	Uncharacterized protein.	Uncharacterized protein.	0.528
DFL_002740	DFL_007457	A0A437ABB2	A0A436ZWB0	Uncharacterized protein.	CP-type G domain-containing protein.	0.575
DFL_002740	DFL_007703	A0A437ABB2	A0A436ZWN8	Uncharacterized protein.	Uncharacterized protein.	0.843
DFL_002740	DFL_009065	A0A437ABB2	A0A436ZQL1	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.856
DFL_002740	DFL_009508	A0A437ABB2	A0A436ZS00	Uncharacterized protein.	Uncharacterized protein.	0.585