A0A550BVT2 protein (Auriculariopsis ampla) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A550BVT2

Uncharacterized protein. (540 aa)

Predicted Functional Partners:

A0A550C7M0

0.874

A0A550CMC6

0.867

A0A550CPE2

0.856

A0A550D051

0.801

A0A550CD34

0.779

A0A550CSH8

0.779

A0A550BYG6

0.751

A0A550C5Y3

0.745

A0A550BZ97

0.734

A0A550CWK6

0.734

Your Current Organism:

Auriculariopsis ampla

NCBI taxonomy Id: 97359
Other names: A. ampla, Schizophyllum amplum

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A550BVT2	A0A550BYG6	Uncharacterized protein.	Pyridoxal-dependent decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.751
A0A550BVT2	A0A550BZ97	Uncharacterized protein.	Isoprenoid synthase domain-containing protein.	0.734
A0A550BVT2	A0A550C5Y3	Uncharacterized protein.	D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.745
A0A550BVT2	A0A550C7M0	Uncharacterized protein.	Tryptophan synthase.	0.874
A0A550BVT2	A0A550CD34	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.779
A0A550BVT2	A0A550CMC6	Uncharacterized protein.	SNF2 family N-terminal domain-containing protein.	0.867
A0A550BVT2	A0A550CPE2	Uncharacterized protein.	Uncharacterized protein.	0.856
A0A550BVT2	A0A550CSH8	Uncharacterized protein.	Histone-fold-containing protein.	0.779
A0A550BVT2	A0A550CWK6	Uncharacterized protein.	Uncharacterized protein.	0.734
A0A550BVT2	A0A550D051	Uncharacterized protein.	WD40-repeat-containing domain protein.	0.801
A0A550BYG6	A0A550BVT2	Pyridoxal-dependent decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Uncharacterized protein.	0.751
A0A550BYG6	A0A550C7M0	Pyridoxal-dependent decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Tryptophan synthase.	0.693
A0A550BZ97	A0A550BVT2	Isoprenoid synthase domain-containing protein.	Uncharacterized protein.	0.734
A0A550C5Y3	A0A550BVT2	D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.745
A0A550C5Y3	A0A550C7M0	D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Tryptophan synthase.	0.980
A0A550C7M0	A0A550BVT2	Tryptophan synthase.	Uncharacterized protein.	0.874
A0A550C7M0	A0A550BYG6	Tryptophan synthase.	Pyridoxal-dependent decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.693
A0A550C7M0	A0A550C5Y3	Tryptophan synthase.	D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.980
A0A550CD34	A0A550BVT2	Fe2OG dioxygenase domain-containing protein.	Uncharacterized protein.	0.779
A0A550CD34	A0A550CMC6	Fe2OG dioxygenase domain-containing protein.	SNF2 family N-terminal domain-containing protein.	0.745