STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A550BVT8Uncharacterized protein. (747 aa)    
Predicted Functional Partners:
A0A550CQ28
RNA helicase.
    
 0.845
A0A550CKG5
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.823
A0A550D0H2
U3 small nucleolar RNA-associated protein 22.
    
 
 0.789
A0A550C5T7
Uncharacterized protein.
   
   0.780
A0A550C6K9
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
    
   0.779
A0A550CGP5
Sas10 C-terminal domain-containing protein.
    
   0.779
A0A550CHJ5
MI domain-containing protein.
   
   0.779
A0A550CP81
S4 RNA-binding domain-containing protein.
    
   0.779
A0A550CSR3
Nucleolar protein 14.
    
   0.779
A0A550CUS8
Bystin-domain-containing protein.
    
   0.779
Your Current Organism:
Auriculariopsis ampla
NCBI taxonomy Id: 97359
Other names: A. ampla, Schizophyllum amplum
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