STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A550BZP9Glycoside hydrolase family 38 protein. (1199 aa)    
Predicted Functional Partners:
A0A550CUF8
RING-type domain-containing protein.
     
 0.896
A0A550CJ65
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
   0.874
A0A550CTC7
Peptidase M18; Belongs to the peptidase M18 family.
   
 
 0.848
A0A550CL27
Uncharacterized protein.
   
 
 0.840
A0A550CN77
Uncharacterized protein.
   
 
 0.840
A0A550CSR5
DNA-directed RNA polymerase.
    
   0.812
A0A550CA85
Autophagy-related protein.
   
 
 0.739
A0A550CWW0
Six-hairpin glycosidase-like protein.
   
  
 0.721
A0A550CV89
Glycoside hydrolase family 85 protein.
  
  
 0.689
A0A550CA61
Glycoside hydrolase family 63 protein.
   
  
 0.669
Your Current Organism:
Auriculariopsis ampla
NCBI taxonomy Id: 97359
Other names: A. ampla, Schizophyllum amplum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.