STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A550CBS2Uncharacterized protein. (245 aa)    
Predicted Functional Partners:
A0A550CA86
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.995
A0A550CLP9
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.995
A0A550CJR1
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.993
A0A550CMI4
BRCA-2_OB1 domain-containing protein.
   
 0.985
A0A550C614
DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.
   
 0.983
A0A550CBP6
Uncharacterized protein.
    
 0.971
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
  
 0.960
A0A550CNE5
DNA polymerase.
  
 0.948
A0A550CSR0
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.941
A0A550CY96
SNF2 family N-terminal domain-containing protein.
   
 
 0.933
Your Current Organism:
Auriculariopsis ampla
NCBI taxonomy Id: 97359
Other names: A. ampla, Schizophyllum amplum
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