STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSR3Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (283 aa)    
Predicted Functional Partners:
A0A550CIU8
Pre-rRNA-processing protein TSR2-domain-containing protein.
   
  
 0.702
A0A550CTR7
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
  
 0.573
A0A550C9X4
Uncharacterized protein.
   
  
 0.537
A0A550C9S2
Low temperature viability protein-domain-containing protein.
   
  
 0.529
A0A550CYK8
Alpha/beta knot methyltransferase.
   
  
 0.524
A0A550CCW4
S-adenosyl-L-methionine-dependent methyltransferase.
   
  
 0.520
A0A550CIZ8
Uncharacterized protein.
   
  
 0.520
A0A550C6K4
WD40-repeat-containing domain protein.
   
  
 0.514
A0A550BZG6
Dihydrouridine synthase-domain-containing protein.
   
  
 0.507
A0A550CFY7
tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.
   
  
 0.507
Your Current Organism:
Auriculariopsis ampla
NCBI taxonomy Id: 97359
Other names: A. ampla, Schizophyllum amplum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.