Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A550CD37Small GTP-binding protein. (203 aa)    
Predicted Functional Partners:
A0A550CVL2
P115 like vesicle tethering protein.
   
 0.995
A0A550CD81
Trafficking protein particle complex subunit BET3.
   
 0.993
A0A550CM95
t-SNARE.
   
 0.992
A0A550CMH9
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.992
A0A550CM34
Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.991
A0A550CNP8
ER-golgi trafficking TRAPP I complex 85 kDa subunit-domain-containing protein.
    
 0.990
A0A550CYZ7
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.989
A0A550CYP2
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
 0.987
A0A550C3L5
SEC7 domain-containing protein.
    
 0.986
A0A550C899
TRAPP complex subunit trs33.
    
 0.986
Your Current Organism:
Auriculariopsis ampla
NCBI taxonomy Id: 97359
Other names: A. ampla, Schizophyllum amplum
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