STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A550CD85RlpA-like double-psi beta-barrel-protein domain-containing protein-containing protein. (310 aa)    
Predicted Functional Partners:
A0A550C9J4
Elongator complex protein 4.
   
 0.768
A0A550CVU7
Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.
   
 0.757
A0A550C328
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
   
 0.756
A0A550BRF2
Uncharacterized protein.
    
 0.749
A0A550CLP7
Uncharacterized protein.
    
 0.749
A0A550CTE6
WD40-repeat-containing domain protein.
   
 
 0.683
A0A550CXX1
Chromatin associated protein KTI12.
   
 
 0.674
A0A550CVH6
Uncharacterized protein.
    
 0.631
A0A550CY50
Uncharacterized protein.
    
 0.631
A0A550CY56
Uncharacterized protein.
    
 0.631
Your Current Organism:
Auriculariopsis ampla
NCBI taxonomy Id: 97359
Other names: A. ampla, Schizophyllum amplum
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