A0A550CDC2 protein (Auriculariopsis ampla) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A550CDC2

MYND-type domain-containing protein. (565 aa)

Predicted Functional Partners:

A0A550CN79

0.847

A0A550CUJ4

0.817

A0A550CN39

0.796

A0A550CCQ4

0.790

A0A550CKI8

0.787

A0A550C3N8

0.765

A0A550CD27

0.760

A0A550CUC8

0.758

A0A550C6L7

0.755

A0A550CNH4

0.754

Your Current Organism:

Auriculariopsis ampla

NCBI taxonomy Id: 97359
Other names: A. ampla, Schizophyllum amplum

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A550C3N8	A0A550C6L7	39S mitochondrial ribosomal protein L46-domain-containing protein.	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	0.990
A0A550C3N8	A0A550CCQ4	39S mitochondrial ribosomal protein L46-domain-containing protein.	Ribosomal L27 protein-domain-containing protein.	0.985
A0A550C3N8	A0A550CD27	39S mitochondrial ribosomal protein L46-domain-containing protein.	Translation protein; Belongs to the universal ribosomal protein uL3 family.	0.984
A0A550C3N8	A0A550CDC2	39S mitochondrial ribosomal protein L46-domain-containing protein.	MYND-type domain-containing protein.	0.765
A0A550C3N8	A0A550CKI8	39S mitochondrial ribosomal protein L46-domain-containing protein.	Ribonuclease III domain-containing protein.	0.992
A0A550C3N8	A0A550CN39	39S mitochondrial ribosomal protein L46-domain-containing protein.	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.981
A0A550C3N8	A0A550CN79	39S mitochondrial ribosomal protein L46-domain-containing protein.	Translation protein SH3-like domain-containing protein.	0.986
A0A550C3N8	A0A550CNH4	39S mitochondrial ribosomal protein L46-domain-containing protein.	Ribosomal L32p protein family-domain-containing protein.	0.976
A0A550C3N8	A0A550CUC8	39S mitochondrial ribosomal protein L46-domain-containing protein.	Ribosomal protein L18e/L15P.	0.985
A0A550C3N8	A0A550CUJ4	39S mitochondrial ribosomal protein L46-domain-containing protein.	Ribosomal protein L7/L12 C-terminal domain-containing protein.	0.982
A0A550C6L7	A0A550C3N8	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	39S mitochondrial ribosomal protein L46-domain-containing protein.	0.990
A0A550C6L7	A0A550CCQ4	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	Ribosomal L27 protein-domain-containing protein.	0.973
A0A550C6L7	A0A550CD27	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	Translation protein; Belongs to the universal ribosomal protein uL3 family.	0.990
A0A550C6L7	A0A550CDC2	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	MYND-type domain-containing protein.	0.755
A0A550C6L7	A0A550CKI8	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	Ribonuclease III domain-containing protein.	0.970
A0A550C6L7	A0A550CN39	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.989
A0A550C6L7	A0A550CN79	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	Translation protein SH3-like domain-containing protein.	0.997
A0A550C6L7	A0A550CNH4	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	Ribosomal L32p protein family-domain-containing protein.	0.980
A0A550C6L7	A0A550CUC8	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein L18e/L15P.	0.986
A0A550C6L7	A0A550CUJ4	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein L7/L12 C-terminal domain-containing protein.	0.990