Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A550CDF4Polysaccharide lyase family 3 protein. (259 aa)    
Predicted Functional Partners:
A0A550CC22
Polysaccharide lyase family 1 protein.
  
 
 0.860
A0A550CTP5
Polysaccharide lyase family 1 protein.
  
 
 0.846
A0A550C7A7
Glycoside hydrolase family 28 protein.
    
 0.842
A0A550CI02
Polysaccharide lyase family 1 protein.
  
  
  0.820
A0A550CB41
Pectinesterase; Involved in maceration and soft-rotting of plant tissue.
    
  0.777
A0A550CM73
Ribonuclease T2-like protein; Belongs to the RNase T2 family.
     
  0.719
A0A550C7A0
Glycoside hydrolase family 28 protein.
     
  0.707
A0A550CCP3
Polysaccharide lyase family 3 protein.
     
  0.665
A0A550CEU1
Pectate lyase-domain-containing protein.
     
  0.665
A0A550CN93
Polysaccharide lyase family 3 protein.
     
  0.665
Your Current Organism:
Auriculariopsis ampla
NCBI taxonomy Id: 97359
Other names: A. ampla, Schizophyllum amplum
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