A0A550CF45 protein (Auriculariopsis ampla) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A550CF45

Uncharacterized protein. (416 aa)

Predicted Functional Partners:

A0A550C7M0

0.657

A0A550BUQ1

0.631

A0A550D051

0.555

A0A550C3B2

0.532

A0A550C3K5

0.532

A0A550CL27

0.513

A0A550CN77

0.513

A0A550CC60

0.476

A0A550CP52

0.476

A0A550CHT1

0.470

Your Current Organism:

Auriculariopsis ampla

NCBI taxonomy Id: 97359
Other names: A. ampla, Schizophyllum amplum

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A550BUQ1	A0A550C3B2	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A550BUQ1	A0A550C3K5	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.998
A0A550BUQ1	A0A550CC60	Uncharacterized protein.	Kinase-like domain-containing protein.	0.894
A0A550BUQ1	A0A550CF45	Uncharacterized protein.	Uncharacterized protein.	0.631
A0A550BUQ1	A0A550CHT1	Uncharacterized protein.	DUF1767 domain-containing protein.	0.960
A0A550BUQ1	A0A550CP52	Uncharacterized protein.	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.	0.894
A0A550C3B2	A0A550BUQ1	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A550C3B2	A0A550CC60	Uncharacterized protein.	Kinase-like domain-containing protein.	0.651
A0A550C3B2	A0A550CF45	Uncharacterized protein.	Uncharacterized protein.	0.532
A0A550C3B2	A0A550CHT1	Uncharacterized protein.	DUF1767 domain-containing protein.	0.947
A0A550C3B2	A0A550CP52	Uncharacterized protein.	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.	0.651
A0A550C3K5	A0A550BUQ1	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	Uncharacterized protein.	0.998
A0A550C3K5	A0A550CC60	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	Kinase-like domain-containing protein.	0.651
A0A550C3K5	A0A550CF45	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	Uncharacterized protein.	0.532
A0A550C3K5	A0A550CHT1	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	DUF1767 domain-containing protein.	0.971
A0A550C3K5	A0A550CP52	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.	0.651
A0A550C7M0	A0A550CF45	Tryptophan synthase.	Uncharacterized protein.	0.657
A0A550CC60	A0A550BUQ1	Kinase-like domain-containing protein.	Uncharacterized protein.	0.894
A0A550CC60	A0A550C3B2	Kinase-like domain-containing protein.	Uncharacterized protein.	0.651
A0A550CC60	A0A550C3K5	Kinase-like domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.651