STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A550CFS3Uncharacterized protein. (466 aa)    
Predicted Functional Partners:
A0A550C951
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.991
A0A550CRR9
Uncharacterized protein.
    
 
 0.889
A0A550CY39
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.795
A0A550CIM1
LsmAD domain-containing protein.
   
 
 0.718
A0A550CY90
Guanine nucleotide binding protein beta subunit.
   
 
 0.676
A0A550CHK3
Uncharacterized protein.
    
 0.670
A0A550CJG2
Mago nashi protein.
    
  0.670
PRT1
Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.
   
 
 0.632
A0A550C4K2
WD40-repeat-containing domain protein.
   
 
 0.619
A0A550CFS0
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.
   
 
 0.610
Your Current Organism:
Auriculariopsis ampla
NCBI taxonomy Id: 97359
Other names: A. ampla, Schizophyllum amplum
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