STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF6E3 ubiquitin-protein ligase MARCH6 isoform X3. (901 aa)    
Predicted Functional Partners:
CNOT2
CCR4-NOT transcription complex subunit 2 isoform X2.
    
 
 0.908
UBE2J2
Ubiquitin conjugating enzyme E2 J2.
    
 
 0.898
UBE2G2
Ubiquitin-conjugating enzyme E2 G2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.854
SQLE
Squalene monooxygenase.
    
 
 0.829
ZGPAT
Zinc finger CCCH-type with G patch domain-containing protein.
   
  
 0.809
DNAJC10
DnaJ homolog subfamily C member 10; Endoplasmic reticulum disulfide reductase involved both in the correct folding of proteins and degradation of misfolded proteins.
      
 0.757
VCP
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
    
 
 0.756
SPATA5L1
Spermatogenesis-associated protein 5-like protein 1 isoform X1.
    
 
 0.756
SPATA5
Spermatogenesis-associated protein 5 isoform X1.
    
 
 0.756
UFD1
Ubiquitin fusion degradation protein 1 homolog.
    
 
 0.745
Your Current Organism:
Tursiops truncatus
NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.