STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM56E3 ubiquitin-protein ligase TRIM56. (755 aa)    
Predicted Functional Partners:
STING1
Stimulator of interferon genes protein isoform X1.
    
 0.942
TRIM32
E3 ubiquitin-protein ligase TRIM32.
    
 0.850
AMFR
E3 ubiquitin-protein ligase AMFR isoform X1.
    
 
 0.832
ZDHHC1
Zinc finger DHHC-type containing 1.
    
 
 0.775
MUL1
Mitochondrial ubiquitin ligase activator of NFKB 1.
      
 0.746
RNF31
E3 ubiquitin-protein ligase RNF31 isoform X6.
    
 
 0.721
TBK1
Serine/threonine-protein kinase TBK1 isoform X1.
    
 0.704
TRIM38
E3 ubiquitin-protein ligase TRIM38.
   
  
 0.695
NLRX1
NLR family member X1.
    
 0.686
NLRC3
Protein NLRC3.
    
 0.675
Your Current Organism:
Tursiops truncatus
NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.