STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF217RBR-type E3 ubiquitin transferase. (272 aa)    
Predicted Functional Partners:
RPS27A
ubiquitin-40S ribosomal protein S27a.
    
 0.869
UBA52
ubiquitin-60S ribosomal protein L40.
    
  0.849
UBE2L6
ubiquitin/ISG15-conjugating enzyme E2 L6; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.845
UBE2L3
Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.845
NEDD8
NEDD8 isoform X2.
    
 0.818
RBX1
E3 ubiquitin-protein ligase RBX1.
    
 0.814
SLCO5A1
Solute carrier organic anion transporter family member.
      
 0.743
PPP1R3E
Protein phosphatase 1 regulatory subunit 3E isoform X5.
      
 0.740
SLC35E3
Solute carrier family 35 member E3.
      
 0.738
DCXR
Dicarbonyl and L-xylulose reductase.
      
 0.698
Your Current Organism:
Tursiops truncatus
NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.