STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE4BUbiquitin conjugation factor E4 B isoform X3. (1304 aa)    
Predicted Functional Partners:
VCP
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
  
 
 0.908
YOD1
Ubiquitin thioesterase OTU1.
    
 
 0.904
UFD1
Ubiquitin fusion degradation protein 1 homolog.
    
 
 0.901
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X8.
   
 0.897
RAD23B
UV excision repair protein RAD23 homolog B.
   
 0.839
RAD23A
UV excision repair protein RAD23 homolog A.
   
 0.830
BIRC6
LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6.
   
 0.823
FAAP100
FA core complex associated protein 100.
    
 
 0.816
NPLOC4
Nuclear protein localization protein 4 homolog isoform X1.
    
 
 0.816
LOC109550594
Ubiquitin-conjugating enzyme E2-22 kDa-like isoform X2.
    
 0.805
Your Current Organism:
Tursiops truncatus
NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.