STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF40Apre-mRNA-processing factor 40 homolog A isoform X2. (956 aa)    
Predicted Functional Partners:
RBM25
LOW QUALITY PROTEIN: RNA-binding protein 25.
   
 0.991
SF1
Splicing factor 1.
   
 0.971
RBM39
RNA-binding protein 39 isoform X2.
   
  0.968
SRRM1
Serine/arginine repetitive matrix protein 1 isoform X1.
   
 0.958
DDX5
Probable ATP-dependent RNA helicase DDX5.
   
 0.956
DHX9
ATP-dependent RNA helicase A isoform X1.
   
 0.954
SRRM2
Serine/arginine repetitive matrix protein 2 isoform X1.
    
  0.954
SRRT
Serrate RNA effector molecule homolog.
   
 
  0.953
LUC7L3
Luc7-like protein 3 isoform X1.
   
 0.952
LOC101338007
RNA-binding protein 7.
    
  0.948
Your Current Organism:
Tursiops truncatus
NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.