STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHQ1LOW QUALITY PROTEIN: protein SHQ1 homolog. (575 aa)    
Predicted Functional Partners:
DKC1
Dyskerin pseudouridine synthase 1.
   
 0.999
TRUB1
Probable tRNA pseudouridine synthase 1 isoform X1.
   
 0.959
GAR1
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 
 0.942
NOP10
H/ACA ribonucleoprotein complex subunit 3.
   
 
 0.941
TRUB2
Probable tRNA pseudouridine synthase 2.
   
 0.925
VPS13D
Vacuolar protein sorting-associated protein 13D isoform X1.
      
 0.786
UHRF1BP1
UHRF1-binding protein 1 isoform X1.
      
 0.783
UBAP2
Ubiquitin-associated protein 2 isoform X6.
   
  
 0.773
ZMYM2
Zinc finger MYM-type protein 2 isoform X1.
      
 0.766
DPH6
Diphthine--ammonia ligase; Amidase that catalyzes the last step of diphthamide biosynthesis using ammonium and ATP.
      
 0.747
Your Current Organism:
Tursiops truncatus
NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.