LOC101338056 protein (Tursiops truncatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101338056

Transcription elongation factor A protein-like 5. (206 aa)

Predicted Functional Partners:

TCEAL1

0.670

HMGA1

0.560

RAB9B

0.520

BEX5

0.509

BEX3

0.503

PTPN11

0.488

ARMCX1

0.442

PTK7

0.435

TGFB1

0.429

Your Current Organism:

Tursiops truncatus

NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARMCX1	BEX3	ENSTTRP00000014792	ENSTTRP00000006741	Armadillo repeat-containing X-linked protein 1.	Protein BEX3-like.	0.420
ARMCX1	BEX5	ENSTTRP00000014792	ENSTTRP00000002238	Armadillo repeat-containing X-linked protein 1.	Protein BEX5.	0.485
ARMCX1	LOC101338056	ENSTTRP00000014792	ENSTTRP00000006726	Armadillo repeat-containing X-linked protein 1.	Transcription elongation factor A protein-like 5.	0.442
ARMCX1	TCEAL1	ENSTTRP00000014792	ENSTTRP00000005769	Armadillo repeat-containing X-linked protein 1.	Transcription elongation factor A protein-like 1 isoform X2.	0.585
BEX3	ARMCX1	ENSTTRP00000006741	ENSTTRP00000014792	Protein BEX3-like.	Armadillo repeat-containing X-linked protein 1.	0.420
BEX3	LOC101338056	ENSTTRP00000006741	ENSTTRP00000006726	Protein BEX3-like.	Transcription elongation factor A protein-like 5.	0.503
BEX3	TCEAL1	ENSTTRP00000006741	ENSTTRP00000005769	Protein BEX3-like.	Transcription elongation factor A protein-like 1 isoform X2.	0.726
BEX5	ARMCX1	ENSTTRP00000002238	ENSTTRP00000014792	Protein BEX5.	Armadillo repeat-containing X-linked protein 1.	0.485
BEX5	LOC101338056	ENSTTRP00000002238	ENSTTRP00000006726	Protein BEX5.	Transcription elongation factor A protein-like 5.	0.509
BEX5	TCEAL1	ENSTTRP00000002238	ENSTTRP00000005769	Protein BEX5.	Transcription elongation factor A protein-like 1 isoform X2.	0.518
HMGA1	LOC101338056	ENSTTRP00000014276	ENSTTRP00000006726	High mobility group protein HMG-I/HMG-Y isoform X1.	Transcription elongation factor A protein-like 5.	0.560
HMGA1	PTPN11	ENSTTRP00000014276	ENSTTRP00000008551	High mobility group protein HMG-I/HMG-Y isoform X1.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.408
HMGA1	RAB9B	ENSTTRP00000014276	ENSTTRP00000003714	High mobility group protein HMG-I/HMG-Y isoform X1.	Ras-related protein Rab-9B.	0.493
HMGA1	TCEAL1	ENSTTRP00000014276	ENSTTRP00000005769	High mobility group protein HMG-I/HMG-Y isoform X1.	Transcription elongation factor A protein-like 1 isoform X2.	0.532
LOC101338056	ARMCX1	ENSTTRP00000006726	ENSTTRP00000014792	Transcription elongation factor A protein-like 5.	Armadillo repeat-containing X-linked protein 1.	0.442
LOC101338056	BEX3	ENSTTRP00000006726	ENSTTRP00000006741	Transcription elongation factor A protein-like 5.	Protein BEX3-like.	0.503
LOC101338056	BEX5	ENSTTRP00000006726	ENSTTRP00000002238	Transcription elongation factor A protein-like 5.	Protein BEX5.	0.509
LOC101338056	HMGA1	ENSTTRP00000006726	ENSTTRP00000014276	Transcription elongation factor A protein-like 5.	High mobility group protein HMG-I/HMG-Y isoform X1.	0.560
LOC101338056	PTK7	ENSTTRP00000006726	ENSTTRP00000006635	Transcription elongation factor A protein-like 5.	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.435
LOC101338056	PTPN11	ENSTTRP00000006726	ENSTTRP00000008551	Transcription elongation factor A protein-like 5.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.488