STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTCHD1Patched domain-containing protein 1. (888 aa)    
Predicted Functional Partners:
SLC10A4
Sodium/bile acid cotransporter 4.
      
 0.677
CDC20B
Cell division cycle protein 20 homolog B.
      
 0.562
IL1RAPL1
Interleukin-1 receptor accessory protein-like 1.
   
  
 0.550
CBLN1
Cerebellin-1.
      
 0.545
NLGN4X
Neuroligin-4, X-linked.
      
 0.543
DDX43
Probable ATP-dependent RNA helicase DDX43 isoform X1; Belongs to the DEAD box helicase family.
      
 0.532
DDX53
LOW QUALITY PROTEIN: DEAD box protein 53.
      
 0.532
NLGN3
Neuroligin 3.
      
 0.521
SHH
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
      
 0.517
FAM3C
Protein FAM3C.
      
 0.509
Your Current Organism:
Tursiops truncatus
NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.