TBX15 protein (Tursiops truncatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TBX15

T-box transcription factor TBX15. (602 aa)

Predicted Functional Partners:

ATG16L2

0.657

SLC16A11

0.630

SHOX2

0.608

SHOX

0.608

ENSTTRP00000000748

0.549

SLC25A40

0.549

ENSTTRP00000014928

0.549

TLE3

0.529

UCP2

0.524

HOXC9

0.517

Your Current Organism:

Tursiops truncatus

NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG16L2	TBX15	ENSTTRP00000002813	ENSTTRP00000010424	Autophagy-related protein 16-2 isoform X1.	T-box transcription factor TBX15.	0.657
ATG16L2	UCP2	ENSTTRP00000002813	ENSTTRP00000005141	Autophagy-related protein 16-2 isoform X1.	Mitochondrial uncoupling protein 2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.560
ENSTTRP00000000748	TBX15	ENSTTRP00000000748	ENSTTRP00000010424	annotation not available	T-box transcription factor TBX15.	0.549
ENSTTRP00000014928	TBX15	ENSTTRP00000014928	ENSTTRP00000010424	annotation not available	T-box transcription factor TBX15.	0.549
HOXC9	SHOX2	ENSTTRP00000010292	ENSTTRP00000001629	Homeobox protein Hox-C9.	LOW QUALITY PROTEIN: short stature homeobox protein 2.	0.506
HOXC9	TBX15	ENSTTRP00000010292	ENSTTRP00000010424	Homeobox protein Hox-C9.	T-box transcription factor TBX15.	0.517
HOXC9	UCP2	ENSTTRP00000010292	ENSTTRP00000005141	Homeobox protein Hox-C9.	Mitochondrial uncoupling protein 2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.639
SHOX	TBX15	ENSTTRP00000002923	ENSTTRP00000010424	Short stature homeobox protein.	T-box transcription factor TBX15.	0.608
SHOX2	HOXC9	ENSTTRP00000001629	ENSTTRP00000010292	LOW QUALITY PROTEIN: short stature homeobox protein 2.	Homeobox protein Hox-C9.	0.506
SHOX2	TBX15	ENSTTRP00000001629	ENSTTRP00000010424	LOW QUALITY PROTEIN: short stature homeobox protein 2.	T-box transcription factor TBX15.	0.608
SLC16A11	TBX15	ENSTTRP00000003754	ENSTTRP00000010424	Solute carrier family 16 member 11.	T-box transcription factor TBX15.	0.630
SLC25A40	TBX15	ENSTTRP00000006027	ENSTTRP00000010424	Solute carrier family 25 member 40 isoform X1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	T-box transcription factor TBX15.	0.549
TBX15	ATG16L2	ENSTTRP00000010424	ENSTTRP00000002813	T-box transcription factor TBX15.	Autophagy-related protein 16-2 isoform X1.	0.657
TBX15	ENSTTRP00000000748	ENSTTRP00000010424	ENSTTRP00000000748	T-box transcription factor TBX15.	annotation not available	0.549
TBX15	ENSTTRP00000014928	ENSTTRP00000010424	ENSTTRP00000014928	T-box transcription factor TBX15.	annotation not available	0.549
TBX15	HOXC9	ENSTTRP00000010424	ENSTTRP00000010292	T-box transcription factor TBX15.	Homeobox protein Hox-C9.	0.517
TBX15	SHOX	ENSTTRP00000010424	ENSTTRP00000002923	T-box transcription factor TBX15.	Short stature homeobox protein.	0.608
TBX15	SHOX2	ENSTTRP00000010424	ENSTTRP00000001629	T-box transcription factor TBX15.	LOW QUALITY PROTEIN: short stature homeobox protein 2.	0.608
TBX15	SLC16A11	ENSTTRP00000010424	ENSTTRP00000003754	T-box transcription factor TBX15.	Solute carrier family 16 member 11.	0.630
TBX15	SLC25A40	ENSTTRP00000010424	ENSTTRP00000006027	T-box transcription factor TBX15.	Solute carrier family 25 member 40 isoform X1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.549