STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF40E3 ubiquitin protein ligase; Belongs to the BRE1 family. (1002 aa)    
Predicted Functional Partners:
RNF20
E3 ubiquitin protein ligase; Belongs to the BRE1 family.
  
0.999
LEO1
RNA polymerase-associated protein LEO1 isoform X1.
   
 0.961
UBE2A
Ubiquitin-conjugating enzyme E2 A; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.939
UBE2B
Ubiquitin-conjugating enzyme E2 B isoform X1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.938
WAC
WW domain-containing adapter protein with coiled-coil isoform X3.
   
 0.925
UBE2U
Ubiquitin-conjugating enzyme E2 U isoform X1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.850
H2BC1
Histone H2B; Belongs to the histone H2B family.
    
 0.808
CDC73
Parafibromin.
   
 0.795
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.786
TFIP11
Tuftelin interacting protein 11.
   
   0.761
Your Current Organism:
Tursiops truncatus
NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.