STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB40BRas-related protein Rab-40B isoform X2. (176 aa)    
Predicted Functional Partners:
WDR45B
WD repeat domain phosphoinositide-interacting protein 3 isoform X7.
 
 
  
 0.804
MTHFSD
Methenyltetrahydrofolate synthase domain-containing protein isoform X2.
   
    0.718
ELOC
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 
 0.681
WDR6
WD repeat domain 6.
   
    0.677
CHM
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.674
UTP15
U3 small nucleolar RNA-associated protein 15 homolog isoform X1.
   
    0.660
RILP
Rab-interacting lysosomal protein.
    
 0.659
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.642
SETD3
Protein-histidine N-methyltransferase.
   
    0.637
RAB3IL1
Guanine nucleotide exchange factor for Rab-3A.
    
 0.619
Your Current Organism:
Tursiops truncatus
NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.