Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SEL90372.1Membrane fusion protein, adhesin transport system. (389 aa)    
Predicted Functional Partners:
SEL90396.1
ATP-binding cassette, subfamily C, LapB.
 
 0.981
SEL90422.1
Outer membrane protein TolC.
  
 
 0.682
SEL89163.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 
 0.665
SEM00929.1
Outer membrane protein TolC.
  
 
 0.614
SEM20151.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
  
  
 0.539
SEM30986.1
Phospholipid-binding lipoprotein MlaA.
 
     0.454
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.442
rpsI
SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
       0.424
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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