STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL92056.1Cationic peptide transport system permease protein. (295 aa)    
Predicted Functional Partners:
SEL92033.1
Cationic peptide transport system permease protein.
 
 
 0.996
SEL92078.1
Cationic peptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.996
SEM01627.1
Cationic peptide transport system ATP-binding protein.
 
 0.985
SEL92001.1
Cationic peptide transport system substrate-binding protein.
 
  
 0.946
SEM55547.1
Dipeptide transport system permease protein.
 
     0.795
SEM01988.1
Dipeptide transport system substrate-binding protein.
 
  
 0.784
SEM55576.1
Dipeptide transport system substrate-binding protein.
 
  
 0.777
SEM06882.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.767
SEM44924.1
Peptide/nickel transport system substrate-binding protein.
  
   
 0.717
lolA
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
       0.534
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.