Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEL92403.1Head domain of trimeric autotransporter adhesin. (416 aa)    
Predicted Functional Partners:
SEM66697.1
Coiled stalk of trimeric autotransporter adhesin.
 
     0.804
SEM27056.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.774
SEL92340.1
Extended Signal Peptide of Type V secretion system.
       0.773
SEL92377.1
Hypothetical protein.
       0.773
SEM13487.1
Head domain of trimeric autotransporter adhesin.
  
     0.768
SEM42081.1
Hypothetical protein.
  
     0.760
SEM69389.1
Hypothetical protein.
  
     0.725
SEM50670.1
Protein of unknown function.
  
     0.546
SEM20151.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
  
  
 0.520
SEM26355.1
Lysophospholipase L1.
   
 
 0.460
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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