Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEL88790.1TonB-dependent Receptor Plug Domain. (903 aa)    
Predicted Functional Partners:
SEL88765.1
Zinc protease; Belongs to the peptidase M16 family.
  
  
 0.692
SEM43054.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.642
SEL94648.1
Hypothetical protein.
  
 
 0.545
SEM19703.1
Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
    
 
 0.498
SEL89383.1
4-oxalocrotonate tautomerase.
  
     0.477
SEL90164.1
Hypothetical protein.
    
 
 0.469
SEM65565.1
Protein of unknown function.
    
 
 0.469
SEM69017.1
Head domain of trimeric autotransporter adhesin.
    
 
 0.469
SEL88816.1
Glutamate or tyrosine decarboxylase.
       0.448
SEM20151.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
     
 0.411
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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