STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL88983.1Manganese/iron transport system ATP-binding protein. (255 aa)    
Predicted Functional Partners:
SEL89017.1
Manganese/iron transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.988
SEL88938.1
Manganese/iron transport system permease protein.
 
 
 0.986
SEL88962.1
Manganese/iron transport system permease protein.
 
 
 0.986
ZnuB
Zinc transport system permease protein.
 
 
 0.788
SEL97450.1
Zinc transport system substrate-binding protein.
 
  
 0.658
SEL89042.1
Histidine triad (HIT) family protein.
       0.498
SEL89072.1
Uncharacterized conserved protein YcfL.
       0.483
SEL89103.1
Thiamine kinase.
       0.468
fur
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
  
  
 0.411
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.