Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SEL89163.1Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. (464 aa)    
Predicted Functional Partners:
SEM19611.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.951
SEM02137.1
Membrane fusion protein, multidrug efflux system.
 
 
 0.847
SEM19640.1
Multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.830
SEL90372.1
Membrane fusion protein, adhesin transport system.
 
 
 0.665
EmrB
MFS transporter, DHA2 family, multidrug resistance protein; Belongs to the major facilitator superfamily.
 
 
 0.644
SEM00951.1
HlyD family secretion protein.
 
 
 0.643
SEM42675.1
HlyD family secretion protein.
 
 
 0.635
SEM20151.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
     
 0.517
SEM32091.1
Phosphoethanolamine transferase for glucans (OPG), alkaline phosphatase superfamily.
  
   
 0.486
SEL90396.1
ATP-binding cassette, subfamily C, LapB.
  
  
 0.454
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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