Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEL89629.1Translocation and assembly module TamB. (1306 aa)    
Predicted Functional Partners:
SEL89654.1
Translocation and assembly module TamA.
 
 0.997
SEL89588.1
ATP-binding cassette, subfamily C, CydC.
 
     0.697
SEL89608.1
ATP-binding cassette, subfamily C, CydD.
 
     0.689
SEM03215.1
Lipoprotein NlpD.
 
     0.653
SEL91769.1
SH3 domain protein.
 
     0.640
MukB
Bacterial condensin subunit MukB; Belongs to the SMC family. MukB subfamily.
  
     0.639
SEM07539.1
Hypothetical protein; Belongs to the UPF0263 family.
  
     0.593
SEM52748.1
Potassium efflux system protein.
 
     0.569
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
  
   
 0.563
SEM02279.1
Hypothetical protein.
  
     0.560
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.