Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEL89742.1TRAP transporter, DctM subunit. (369 aa)    
Predicted Functional Partners:
SEL95778.1
Tripartite ATP-independent transporter solute receptor, DctP family.
   
 0.793
SEM60559.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
   
 0.777
SEL95731.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.699
SEL89756.1
Gluconokinase.
       0.576
SEL89700.1
Hypothetical protein; Belongs to the UPF0125 (RnfH) family.
       0.493
SEL89717.1
Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module.
       0.493
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.