Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEL89885.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (537 aa)    
Predicted Functional Partners:
SEL89907.1
Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
       0.738
SEL97450.1
Zinc transport system substrate-binding protein.
 
  
 0.573
SEM16445.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.541
SEL89924.1
single-stranded-DNA-specific exonuclease.
       0.533
SEM17010.1
N-acetylmuramoyl-L-alanine amidase.
 
   
 0.515
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
 
    0.493
SEL89948.1
Hypothetical protein.
       0.482
SEM01317.1
Penicillin-binding protein 1A.
  
   
 0.476
SEL89992.1
Uncharacterized conserved protein, conains N-terminal glutamine amidotransferase (GATase1)-like domain.
       0.456
SEL90023.1
YcxB-like protein.
       0.456
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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